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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27939900_27941385_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27939900 - 27941385
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATTTTTATA
Flanking Amino Acid:
SKDDLVLKVYMCNTESDWYQ
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
80.7
33.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.1
0.77
0.7
79.9
32.1
Minor 5ss
36.4
-1.5
3.4
53.2
44
Minor BPS
50.5
0.01
1.6
62.53
38

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760