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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27974837_27976065_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27974837 - 27976065
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGATTTTAACT
Flanking Amino Acid:
DGTHELIVHKCEENTNLQDS
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
73.4
0.81
1.2
83.9
37.2

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760