About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27982206_27982344_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27982206 - 27982344
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACC
5'SS Class:
major
3'SS Sequence:
ATTCTTCAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTCTTCAATC
Flanking Amino Acid:
KEIDGSEIVKFLQDTLDTLF
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.9
34.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.4
0.5
1
71.9
37.7
Minor 5ss
42.4
-0.8
2.6
55.1
42.2
Minor BPS
69
0.57
1.4
75.79
34.5

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760