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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_27986328_27993939_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27986328 - 27993939
Intron Length:
7612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
TVESHLYTNPDSRYILLPVV
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
87.3
0.84
0.8
85.7
33.4
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760