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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28015077_28016758_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28015077 - 28016758
Intron Length:
1682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAA
5'SS Class:
major
3'SS Sequence:
ATGTTTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AATGAAATAACC
Flanking Amino Acid:
NFLNENFDYKIWDSYFFLAV
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.2
37.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.1
0.59
0.9
71.2
39
Minor 5ss
34
-1.8
3.6
45.7
49.5
Minor BPS
44.5
-0.4
2
57.75
39.9

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760