Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28019821_28021411_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28019821 - 28021411

Intron Length:

1591

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTAT

5'SS Class:

major

3'SS Sequence:

TTATATGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAC

U12 Branch Point Sequence:

TACACCACACTT

Flanking Amino Acid:

EQRRSGNFKQVEAKLIDKLD

Intron Amino Acid Position:

1100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

68.7

38.6

Major BPS

72.8

0.57

30.3

Major PPT

79.2

0.66

73.3

41.4

Minor 5ss

37.4

-1.4

3.5

55.6

48.6

Minor BPS

42.7

-0.4

59.19

43.9

Associated Gene:

Gene:

DOCK4

Ensembl Gene ID:

ENSAPLG00000007085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007462

27899352 - 28058111

158760