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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28021498_28027094_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28021498 - 28027094
Intron Length:
5597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTAAAAATAAAC
Flanking Amino Acid:
DETYRELFNSILLKKIERET
Intron Amino Acid Position:
1128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
85.1
25.6
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
96.1
1.04
0.5
95.6
14.9
Minor 5ss
34.4
-1.8
2.9
46.9
41.8
Minor BPS
42.9
-0.5
2
57.51
39.6

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760