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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28027191_28028736_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28027191 - 28028736
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTACTT
Flanking Amino Acid:
TRLMERLLDYRDCMKMGEVD
Intron Amino Acid Position:
1160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
57.7
0.32
1.8
78.9
37.5

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760