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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28028798_28032349_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28028798 - 28032349
Intron Length:
3552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
AATTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTACTA
Flanking Amino Acid:
KKIGCTVSLLNFYKTELNKE
Intron Amino Acid Position:
1181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
73.6
36.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.9
0.7
0.9
74.8
38.9
Minor 5ss
41.9
-0.9
2.5
49.3
41.1
Minor BPS
60.8
0.34
1.9
74.94
36.6

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760