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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28032444_28036104_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28032444 - 28036104
Intron Length:
3661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAG
5'SS Class:
major
3'SS Sequence:
ATTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TGTGGTGTAATT
Flanking Amino Acid:
DLHLKAQNFTEAAYTLLLYD
Intron Amino Acid Position:
1212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
66
40.1
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
83.1
0.75
0.9
74.1
41
Minor 5ss
35.3
-1.7
3.4
46.6
48.7
Minor BPS
45.2
-0.2
2.4
67.55
44.3

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760