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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28036254_28037313_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28036254 - 28037313
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
TACTTGCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ATGTCTTTTACT
Flanking Amino Acid:
TIIQNFDRGKCWENGIILCR
Intron Amino Acid Position:
1262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
79.5
0.66
0.9
73.1
36.9
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
68.8
0.67
1.6
82.01
39.5

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760