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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28039193_28041349_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28039193 - 28041349
Intron Length:
2157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTATTCTGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
YGKKFPFFLRNKEFVCRGHD
Intron Amino Acid Position:
1326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.7
0.62
0.9
77.2
36.8
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760