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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28041492_28042057_F

Intron Information:

Intron Rank:
39
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
28041492 - 28042057
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATCCGCA
5'SS Class:
weak_minor
3'SS Sequence:
TCTTTACATACAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATAGCCTTAACT
Flanking Amino Acid:
DETIFQAEAQYLQIYAVTPI
Intron Amino Acid Position:
1373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.3
-0.1
1.3
42.5
38.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.6
0.67
0.9
73.9
34.9
Minor 5ss
51
0.03
2.9
65.2
46.2
Minor BPS
79.1
0.99
1.3
87.51
37.6

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760