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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28042225_28043505_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28042225 - 28043505
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATTG
Flanking Amino Acid:
GTKDKENEFKSLWVERTTLI
Intron Amino Acid Position:
1429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
79.4
0.66
0.8
74.6
34.6
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
54.1
-0
1.9
67.66
40.5

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760