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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28043629_28047521_F

Intron Information:

Intron Rank:
41
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
28043629 - 28047521
Intron Length:
3893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTACTTC
5'SS Class:
weak_major
3'SS Sequence:
TATTCTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTACATGACT
Flanking Amino Acid:
MRLTAICVVLAFFIKEYVLN
Intron Amino Acid Position:
1470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.2
0.08
1.2
53
38.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.6
0.69
0.7
78.7
29.7
Minor 5ss
51.3
0.05
2.5
65.2
40.8
Minor BPS
66.8
0.61
1.8
89.83
33.7

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760