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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28047606_28049052_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28047606 - 28049052
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TTTCCCCTCTTT
Flanking Amino Acid:
TRLRELMLEQAQILEFGLAV
Intron Amino Acid Position:
1498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
82.3
0.73
0.8
76.8
31.9
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
38.8
-0.7
3.6
74.09
42.9

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760