About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28049173_28049518_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28049173 - 28049518
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGAG
5'SS Class:
major
3'SS Sequence:
TCACACCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCATTGTAACC
Flanking Amino Acid:
FVMKSSLGIQEFSACVQASP
Intron Amino Acid Position:
1538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
65.8
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.2
0.52
0.9
65.8
35.4
Minor 5ss
30.3
-2.3
3.4
39.7
46.3
Minor BPS
50.4
-0
2
65.81
40.5

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760