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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28050027_28050532_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28050027 - 28050532
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATT
5'SS Class:
major
3'SS Sequence:
CTTCTGTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
TATGCAGTGATA
Flanking Amino Acid:
ESSDEVFNMQPSPSTSSLSS
Intron Amino Acid Position:
1619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
78.1
36.3
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
72.6
0.51
1
67.4
37.9
Minor 5ss
37.7
-1.4
3.4
57.7
46.5
Minor BPS
44.5
-0.4
2.3
59.91
40.3

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760