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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28050959_28054354_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28050959 - 28054354
Intron Length:
3396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATACATAAACT
Flanking Amino Acid:
IYPTPSETSQRMLFNHVGDG
Intron Amino Acid Position:
1683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
79.7
0.67
0.9
72.6
36.3
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
57.6
0.32
2
79.58
41.7

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760