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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28054428_28057018_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28054428 - 28057018
Intron Length:
2591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
AGCTTTTGCATT
Flanking Amino Acid:
SDSNLPGPDKAVNTTPSSWS
Intron Amino Acid Position:
1707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.3
0.73
0.8
73.4
36.7
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
44.8
-0.3
1.8
58.79
39.2

Associated Gene:

Gene:
DOCK4
Ensembl Gene ID:
ENSAPLG00000007085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007462
27899352 - 28058111
158760