Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28089458_28095780_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

28089458 - 28095780

Intron Length:

6323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATTA

5'SS Class:

strong_major

3'SS Sequence:

AAATATTTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CGTTTTTTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

80.2

28.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.6

0.55

70.4

44.3

Minor 5ss

40.9

-1

3.2

48.2

Minor BPS

66.7

0.6

1.4

77.19

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025497

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023142

28089100 - 28233059

143960