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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28094003_28095780_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28094003 - 28095780
Intron Length:
1778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AAATATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CGTTTTTTAAAT
Flanking Amino Acid:
IKHFNICFELIMAQAQGFGR
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.6
0.55
1
70.4
44.3
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
66.7
0.6
1.4
77.19
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033938
28093967 - 28106861
12895