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Intron Name: Anas_platyrhynchos_platyrhynchos_1_28095919_28102004_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28095919 - 28102004

Intron Length:

6086

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTTG

5'SS Class:

strong_major

3'SS Sequence:

TCCTCTCCCTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTAAAT

U12 Branch Point Sequence:

GTAGACTTAAAT

Flanking Amino Acid:

VARVEGASMQPSLNPGGRQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

72.1

39.9

Major BPS

0.5

1.1

76.9

32.8

Major PPT

67.2

0.39

0.9

71.4

27.1

Minor 5ss

46.4

-0.4

3.1

63.6

48.1

Minor BPS

56.4

0.28

1.8

72.4

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025497

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026414

28072990 - 28106861

33872

ENSAPLT00000025357

28091810 - 28233059

141250

ENSAPLT00000038732

28095784 - 28117297

21514

ENSAPLT00000023142

28089100 - 28233059

143960

ENSAPLT00000033938

28093967 - 28106861

12895

ENSAPLT00000007270

28095784 - 28193566

97783

ENSAPLT00000028385

28091810 - 28107677

15868