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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28102109_28102210_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28102109 - 28102210
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TGGCATACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATCT
Flanking Amino Acid:
DVQRGDIVSLVYMYGQGTSF
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
80
34.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67
0.38
1
59.3
41.4
Minor 5ss
39.4
-1.2
2.9
52.2
44.4
Minor BPS
59.9
0.39
1.6
76.84
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033938
28093967 - 28106861
12895