Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28102109_28107616_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28102109 - 28107616

Intron Length:

5508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTAAGTAAT

5'SS Class:

major

3'SS Sequence:

TGTTTGTACTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

TTGTTTGTACTT

Flanking Amino Acid:

DVQRGDIVSLVSLYQVIYLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.1

34.8

Major BPS

82.2

0.8

71.9

35.8

Major PPT

71.2

0.48

0.9

70.2

40.4

Minor 5ss

39.4

-1.2

2.9

52.2

44.4

Minor BPS

47.3

-0.1

2.2

70.08

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025497

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028385

28091810 - 28107677

15868