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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28102109_28116182_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
28102109 - 28116182
Intron Length:
14074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TGACTTGAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GTGACTTGAAAC
Flanking Amino Acid:
DVQRGDIVSLVTDVWCC*
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
80
34.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
59.7
0.22
1.1
54.8
43.7
Minor 5ss
39.4
-1.2
2.9
52.2
44.4
Minor BPS
49.6
-0
1.6
58.32
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038732
28095784 - 28117297
21514