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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28102109_28193511_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
28102109 - 28193511
Intron Length:
91403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
AAAACCAAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTTTCCAAAACC
Flanking Amino Acid:
DVQRGDIVSLVSYRRRALVA
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
80
34.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
48.5
-0
1.1
38.2
37.7
Minor 5ss
39.4
-1.2
2.9
52.2
44.4
Minor BPS
59.8
0.29
2
75.32
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007270
28095784 - 28193566
97783