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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28441754_28539366_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28441754 - 28539366
Intron Length:
97613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CAATAGTTAATA
Flanking Amino Acid:
HSFDSNAFGPVSLGLLHARA
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
74.5
37.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
71.5
0.48
1.1
65
45.2
Minor 5ss
34
-1.8
2.9
42
44.5
Minor BPS
47.7
-0.1
2.2
58.24
41.4

Associated Gene:

Gene:
IMMP2L
Ensembl Gene ID:
ENSAPLG00000022428
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023655
28272191 - 28539486
267296