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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28594694_28595422_F

Intron Information:

Intron Rank:
128304
Intron Class:
major
Intron Phase:
Intron Coordinates:
28594694 - 28595422
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
CCTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
AACAAGTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
92.4
0.95
0.6
91.3
20.2
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
40
-0.7
2.3
48.55
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019102
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019809
28594308 - 28597639
3332