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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28595500_28597545_F

Intron Information:

Intron Rank:
128305
Intron Class:
major
Intron Phase:
Intron Coordinates:
28595500 - 28597545
Intron Length:
2046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTCTATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
88.9
0.87
0.6
88
21.8
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
59
0.36
1.9
82.47
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019102
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019809
28594308 - 28597639
3332