About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28641393_28644192_F

Intron Information:

Intron Rank:
129527
Intron Class:
major
Intron Phase:
Intron Coordinates:
28641393 - 28644192
Intron Length:
2800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTGCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CCTCAATTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.3
0.48
1
65.7
40
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
50.9
0.01
1.8
62.11
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019709
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044955
28641294 - 28644247
2954