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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28751263_28752486_R

Intron Information:

Intron Rank:
141703
Intron Class:
major
Intron Phase:
Intron Coordinates:
28751263 - 28752486
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AGTTCCTAATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
32.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
72.7
0.51
1
68
37.7
Minor 5ss
43.3
-0.7
2.8
60.6
43.7
Minor BPS
59.9
0.39
2
79.23
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031833
28751036 - 28760732
9697