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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28839424_28852115_R

Intron Information:

Intron Rank:
154044
Intron Class:
major
Intron Phase:
Intron Coordinates:
28839424 - 28852115
Intron Length:
12692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGACCAA
5'SS Class:
major
3'SS Sequence:
ATATATCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATATTATTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
58.4
42.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
70.1
0.45
1
63.6
42
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
48.7
-0
1.9
69.71
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039007
28839162 - 28853319
14158