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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28853120_28853261_R

Intron Information:

Intron Rank:
154046
Intron Class:
major
Intron Phase:
Intron Coordinates:
28853120 - 28853261
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
85.1
25.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.6
0.6
0.9
75.5
38.6
Minor 5ss
34.4
-1.8
2.9
46.9
41.8
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039007
28839162 - 28853319
14158