About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28853120_28859165_R

Intron Information:

Intron Rank:
154043
Intron Class:
major
Intron Phase:
Intron Coordinates:
28853120 - 28859165
Intron Length:
6046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGCT
5'SS Class:
major
3'SS Sequence:
TTTTGTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
71.5
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.6
0.6
0.9
75.5
38.6
Minor 5ss
47
-0.3
2.9
68.1
42.9
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030367
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022077
28831546 - 28859296
27751