About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28866314_28874464_R

Intron Information:

Intron Rank:
155256
Intron Class:
major
Intron Phase:
Intron Coordinates:
28866314 - 28874464
Intron Length:
8151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TATTTTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
88.3
0.86
0.7
83.4
31.4
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
52.8
-0
1.8
60.98
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046329
28861320 - 28874815
13496