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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28986312_28995784_R

Intron Information:

Intron Rank:
146666
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
28986312 - 28995784
Intron Length:
9473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATACTGC
5'SS Class:
weak_major
3'SS Sequence:
TCTACAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTCCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.1
52.8
39.5
Major BPS
80
0.75
1
78.6
31
Major PPT
75.2
0.57
0.9
70.9
38.6
Minor 5ss
54.8
0.16
2.5
66.8
42.7
Minor BPS
66.8
0.61
1.6
82.29
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039697
28985809 - 29045259
59451