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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28995888_28997885_R

Intron Information:

Intron Rank:
146667
Intron Class:
major
Intron Phase:
Intron Coordinates:
28995888 - 28997885
Intron Length:
1998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTGTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
49.1
0.01
2.1
72.3
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039697
28985809 - 29045259
59451