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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_28998053_29045078_R

Intron Information:

Intron Rank:
146668
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
28998053 - 29045078
Intron Length:
47026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
CTCAAACCCTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATATCTCAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.2
66
45.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
59.7
0.22
0.9
55.4
34.9
Minor 5ss
44
-0.6
3
67.7
43
Minor BPS
50.3
-0
2
66.29
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026240
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039697
28985809 - 29045259
59451