About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29062468_29063802_F

Intron Information:

Intron Rank:
125824
Intron Class:
major
Intron Phase:
Intron Coordinates:
29062468 - 29063802
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTCTTCTGACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.4
0.64
1
82.9
32.1
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
51.4
0.12
1.8
73.47
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027966
29061878 - 29063874
1997