About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29062468_29072134_F

Intron Information:

Intron Rank:
125825
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
29062468 - 29072134
Intron Length:
9667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ACACCAAACAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATGTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
46.4
-0.2
1
38.6
30.8
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
53.1
0.18
2
76.05
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038028
29061878 - 29080234
18357