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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29062619_29072134_F

Intron Information:

Intron Rank:
125822
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
29062619 - 29072134
Intron Length:
9516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGCTAT
5'SS Class:
weak_major
3'SS Sequence:
ACACCAAACAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATGTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.4
66.2
42.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
46.4
-0.2
1
38.6
30.8
Minor 5ss
47.4
-0.3
2.9
69
41.9
Minor BPS
53.1
0.18
2
76.05
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023418
29061878 - 29080404
18527