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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29257681_29258811_R

Intron Information:

Intron Rank:
143147
Intron Class:
major
Intron Phase:
Intron Coordinates:
29257681 - 29258811
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTGTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
CTTGCCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
60.7
0.24
1.7
76.4
37.7
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
60.8
0.32
1.7
69.6
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024369
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026307
29257218 - 29264975
7758