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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29258914_29264472_R

Intron Information:

Intron Rank:
143148
Intron Class:
major
Intron Phase:
Intron Coordinates:
29258914 - 29264472
Intron Length:
5559

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
ACAGAGGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
69.6
0.49
1
59.5
39
Major PPT
82.5
0.73
0.8
80
31.9
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
35.5
-1
2.5
50.37
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024369
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026307
29257218 - 29264975
7758