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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29277404_29279362_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
29277404 - 29279362
Intron Length:
1959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTAAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCCCAACT
Flanking Amino Acid:
MLSRPSWRRFPLHDKERL
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.7
0.22
1.2
62.2
41.6
Minor 5ss
44.5
-0.6
2.7
57.3
47.4
Minor BPS
70.9
0.73
1.9
93.6
34

Associated Gene:

Gene:
THAP5
Ensembl Gene ID:
ENSAPLG00000008047
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008342
29277378 - 29283827
6450