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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29279553_29280880_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29279553 - 29280880
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAC
U12 Branch Point Sequence:
GTTTTTTTGTTT
Flanking Amino Acid:
PTIFSSPDDEEKDSSQNSPQ
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
57.5
0.19
1.1
55.1
40.5
Major PPT
88.8
0.87
0.7
81.3
36.4
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
THAP5
Ensembl Gene ID:
ENSAPLG00000008047
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008342
29277378 - 29283827
6450