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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29281867_29283556_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
3UTR
Intron Coordinates:
29281867 - 29283556
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AT
5'SS Sequence:
ACA|GTATCTTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTCTGAATTTTAT|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58
0.19
1.2
65.5
41
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
41.7
-0.4
3.2
63.5
41.9
Minor 5ss
84.8
1.17
1.4
89.4
22.9
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
THAP5
Ensembl Gene ID:
ENSAPLG00000008047
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008342
29277378 - 29283827
6450