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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29352462_29353681_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29352462 - 29353681
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAAATA
5'SS Class:
major
3'SS Sequence:
ATCATAACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTATCATAACT
Flanking Amino Acid:
FPESRGVAIKEKVIPCLLRL
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1
70.4
35.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
63.8
0.31
0.9
56.1
38.4
Minor 5ss
29.9
-2.3
3.2
39.8
45.8
Minor BPS
70.7
0.73
1.6
89.65
34

Associated Gene:

Gene:
PNPLA8
Ensembl Gene ID:
ENSAPLG00000017737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036392
29350131 - 29385171
35041