About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29353834_29355478_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29353834 - 29355478
Intron Length:
1645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
CTGCCATTATAT
Flanking Amino Acid:
RVLAIDGGGTRGLVALQTLR
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
79.7
0.67
1
76.9
42.1
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
46.5
-0.1
2
63.99
45.7

Associated Gene:

Gene:
PNPLA8
Ensembl Gene ID:
ENSAPLG00000017737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036392
29350131 - 29385171
35041