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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29355574_29360927_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29355574 - 29360927
Intron Length:
5354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTATATTTAACA
Flanking Amino Acid:
LFDYICGVSTGAILAFMLGL
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
86.7
0.83
0.7
84.6
29.8
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
74.4
0.76
1.4
81.37
33.4

Associated Gene:

Gene:
PNPLA8
Ensembl Gene ID:
ENSAPLG00000017737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036392
29350131 - 29385171
35041